STRINGSTRING
XP_008438392.1 protein (Cucumis melo) - STRING interaction network
"XP_008438392.1" - Pectate lyase in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438392.1Pectate lyase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (447 aa)    
Predicted Functional Partners:
XP_008443656.1
Polygalacturonase (404 aa)
   
 
  0.874
MPG2
Polygalacturonase-like precursor; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- added 759 bases not found in genome assembly (423 aa)
       
  0.872
XP_008443532.1
Polygalacturonase At1g48100; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (477 aa)
       
  0.790
XP_008465623.1
Probable pectinesterase/pectinesterase inhibitor 34 (221 aa)
       
  0.773
XP_008458040.1
Pectinesterase; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 2 bases in 1 codon (604 aa)
 
   
  0.741
XP_008449197.1
Exopolygalacturonase-like (355 aa)
       
  0.737
XP_008459702.1
Pectinesterase 31 (284 aa)
 
   
  0.725
XP_008466403.1
Pectinesterase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (567 aa)
 
   
  0.722
XP_008466374.1
Pectinesterase-like isoform X1 (567 aa)
 
   
  0.722
XP_008436965.1
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (519 aa)
 
   
  0.721
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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