STRINGSTRING
XP_008438417.1 protein (Cucumis melo) - STRING interaction network
"XP_008438417.1" - PHD finger protein ING in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438417.1PHD finger protein ING; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (239 aa)    
Predicted Functional Partners:
XP_008451252.1
Chromatin modification-related protein MEAF6 (154 aa)
     
 
  0.940
XP_008460476.1
Histone acetyltransferase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 10 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns; Belongs to the MYST (SAS/MOZ) family (449 aa)
     
 
  0.936
XP_008451441.1
SWR1-complex protein 4; DNA methyltransferase 1-associated protein 1 (443 aa)
     
 
  0.919
XP_008465713.1
Paired amphipathic helix protein Sin3-like 4 isoform X1 (1390 aa)
     
 
  0.891
XP_008446276.1
Paired amphipathic helix protein Sin3-like 4 isoform X1 (1441 aa)
     
 
  0.891
XP_008456589.1
Enhancer of polycomb-like protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (827 aa)
     
 
  0.882
XP_008450499.1
Enhancer of polycomb-like protein 1 (449 aa)
     
 
  0.882
XP_008445293.1
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (136 aa)
       
 
  0.852
XP_008450995.1
TATA-box-binding protein (200 aa)
       
 
  0.844
XP_008440808.1
Transcription initiation factor TFIID subunit 14b isoform X1 (297 aa)
       
 
  0.844
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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