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XP_008438507.1 protein (Cucumis melo) - STRING interaction network
"XP_008438507.1" - Uncharacterized protein At4g14342-like isoform X1 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438507.1Uncharacterized protein At4g14342-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (87 aa)    
Predicted Functional Partners:
XP_008457362.1
PHD finger-like domain-containing protein 5B; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (110 aa)
     
 
  0.982
XP_008452073.1
Small nuclear ribonucleoprotein Sm D2-like (107 aa)
     
 
  0.978
XP_008437171.1
Sm-like protein LSM8; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (98 aa)
     
      0.977
XP_008462580.1
Probable small nuclear ribonucleoprotein G (80 aa)
     
      0.976
XP_008467086.1
U6 snRNA-associated Sm-like protein LSm7 (75 aa)
     
      0.953
XP_008462876.1
Splicing factor 3B subunit 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (1262 aa)
     
 
  0.953
XP_008441819.1
Splicing factor 3B subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments (599 aa)
     
 
  0.952
XP_008449647.1
Splicing factor 3B subunit 6-like protein (125 aa)
     
 
  0.948
XP_008454507.1
Sm-like protein LSM5; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns (140 aa)
     
      0.948
XP_008463776.1
Probable small nuclear ribonucleoprotein F (87 aa)
     
      0.945
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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