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XP_008438509.1 protein (Cucumis melo) - STRING interaction network
"XP_008438509.1" - Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438509.1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (179 aa)    
Predicted Functional Partners:
XP_008460658.1
Kinesin-like protein KIF22; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (842 aa)
           
  0.629
XP_008450397.1
Phosphotransferase; Hexokinase-3-like; Belongs to the hexokinase family (507 aa)
           
  0.528
XP_008449690.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns; Belongs to the hexokinase family (501 aa)
           
  0.528
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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