STRINGSTRING
XP_008438525.1 protein (Cucumis melo) - STRING interaction network
"XP_008438525.1" - LOW QUALITY PROTEIN: pre-mRNA-splicing factor SLU7-like in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438525.1LOW QUALITY PROTEIN- pre-mRNA-splicing factor SLU7-like; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 1 base in 1 codon (540 aa)    
Predicted Functional Partners:
XP_008457705.1
pre-mRNA-splicing factor syf2 (315 aa)
     
 
  0.952
XP_008451253.1
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (1298 aa)
     
 
  0.948
XP_008449060.1
Protein CWC15 homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 9 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (229 aa)
     
 
  0.948
XP_008451349.1
pre-mRNA-splicing factor 18 (420 aa)
     
 
  0.948
XP_008462822.1
BUD13 homolog (557 aa)
     
 
  0.947
XP_008461126.1
pre-mRNA-processing-splicing factor 8-like (2347 aa)
     
 
  0.947
XP_008452614.1
Zinc finger CCCH domain-containing protein 40-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (523 aa)
       
 
  0.946
XP_008456689.1
116 kDa U5 small nuclear ribonucleoprotein component-like (988 aa)
     
 
  0.945
XP_008449735.1
pre-mRNA-splicing factor CWC22 homolog isoform X1 (847 aa)
     
 
  0.944
XP_008439899.1
pre-mRNA-splicing factor SYF1 (913 aa)
     
 
  0.944
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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