STRINGSTRING
XP_008438532.1 protein (Cucumis melo) - STRING interaction network
"XP_008438532.1" - Serine/threonine-protein phosphatase in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438532.1Serine/threonine-protein phosphatase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (325 aa)    
Predicted Functional Partners:
XP_008446784.1
RNA polymerase II subunit A C-terminal domain phosphatase SSU72; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (193 aa)
       
  0.954
XP_008465965.1
Flowering time control protein FY; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (732 aa)
     
  0.925
XP_008443561.1
WD repeat-containing protein 82; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (337 aa)
     
  0.910
XP_008440813.1
WD repeat-containing protein 82-B (332 aa)
     
  0.910
XP_008441850.1
Cleavage and polyadenylation specificity factor subunit 1 isoform X1 (1452 aa)
     
  0.872
XP_008439247.1
Cleavage and polyadenylation specificity factor subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (738 aa)
     
  0.861
XP_008456674.1
LOW QUALITY PROTEIN- type 1 phosphatases regulator ypi1; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (114 aa)
     
 
  0.816
XP_008462692.1
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 (1083 aa)
   
 
  0.813
XP_008465568.1
Cleavage and polyadenylation specificity factor subunit 3-I (617 aa)
       
  0.756
XP_008459517.1
30-kDa cleavage and polyadenylation specificity factor 30-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (708 aa)
       
  0.753
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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