STRINGSTRING
XP_008438538.1 protein (Cucumis melo) - STRING interaction network
"XP_008438538.1" - RING-H2 finger protein ATL16 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438538.1RING-H2 finger protein ATL16 (322 aa)    
Predicted Functional Partners:
XP_008450756.1
Serine/threonine-protein kinase EDR1 (945 aa)
       
 
  0.686
XP_008460778.1
Uncharacterized protein LOC103499540 (512 aa)
           
  0.629
XP_008458107.1
3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 8 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns; Belongs to the enoyl-CoA hydratase/isomerase family (455 aa)
           
  0.571
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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