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XP_008438585.1 protein (Cucumis melo) - STRING interaction network
"XP_008438585.1" - DNA-directed RNA polymerase V subunit 7-like in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438585.1DNA-directed RNA polymerase V subunit 7-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 12 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (190 aa)    
Predicted Functional Partners:
XP_008438942.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.940
XP_008441761.1
LOW QUALITY PROTEIN- DNA-directed RNA polymerases II, IV and V subunit 3-like; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (320 aa)
     
 
  0.938
XP_008461561.1
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
     
 
  0.930
XP_008466421.1
DNA-directed RNA polymerases II, IV and V subunit 6A-like (217 aa)
     
 
  0.929
XP_008439178.1
DNA-directed RNA polymerases II, IV and V subunit 6A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (143 aa)
     
 
  0.929
XP_008456781.1
Transcription elongation factor S-II (369 aa)
     
 
  0.928
XP_008454076.1
DNA-directed RNA polymerases II and V subunit 8A-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (144 aa)
     
 
  0.924
XP_008453774.1
DNA-directed RNA polymerases II and V subunit 8A-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (146 aa)
     
 
  0.924
XP_008461807.1
DNA-directed RNA polymerases II, IV and V subunit 11; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (116 aa)
     
 
  0.923
XP_008461312.1
DNA-directed RNA polymerases II, IV and V subunit 11-like (116 aa)
     
 
  0.923
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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