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XP_008438612.1 protein (Cucumis melo) - STRING interaction network
"XP_008438612.1" - Stem-specific protein TSJT1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
XP_008438612.1Stem-specific protein TSJT1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 16 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns (250 aa)    
Predicted Functional Partners:
XP_008451036.1
SNF1-related protein kinase regulatory subunit beta-1 (285 aa)
     
        0.861
XP_008448748.1
Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import (886 aa)
           
  0.734
XP_008462520.1
SRSF protein kinase 1-like (545 aa)
           
  0.622
XP_008458656.1
Serine/threonine-protein kinase SRPK; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (544 aa)
           
  0.622
XP_008458459.1
Flowering-promoting factor 1-like protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments (111 aa)
           
  0.567
XP_008447128.1
Callose synthase 7 (1930 aa)
           
  0.567
XP_008442279.1
Callose synthase 7-like (121 aa)
           
  0.567
XP_008461402.1
Nitrogen regulatory protein P-II homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (202 aa)
           
  0.562
XP_008437857.1
Arginine/serine-rich-splicing factor RSP31-like isoform X1 (253 aa)
           
  0.557
XP_008463151.1
Universal stress protein A-like protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 11 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (170 aa)
     
   
  0.489
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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