STRINGSTRING
XP_008438620.1 protein (Cucumis melo) - STRING interaction network
"XP_008438620.1" - Early light-induced protein 1, chloroplastic in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438620.1Early light-induced protein 1, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 73 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (192 aa)    
Predicted Functional Partners:
XP_008449073.1
Probable WRKY transcription factor 20 isoform X1 (574 aa)
           
  0.730
XP_008453061.1
Skin secretory protein xP2-like; Early nodulin-like protein 2 (452 aa)
           
  0.719
XP_008448305.1
Early nodulin-like protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (201 aa)
           
  0.719
XP_008459494.1
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (289 aa)
           
  0.717
XP_008448777.1
Uncharacterized protein LOC103490842; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 86 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (263 aa)
           
  0.646
XP_008460041.1
Metal tolerance protein 1-like isoform X1 (420 aa)
           
  0.631
XP_008460122.1
LOW QUALITY PROTEIN- vestitone reductase-like; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 2 bases in 1 codon (332 aa)
           
  0.630
XP_008460121.1
Vestitone reductase-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 9 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (328 aa)
           
  0.630
XP_008441491.1
Proline-rich receptor-like protein kinase PERK14; Putative protein TPRXL (191 aa)
           
  0.627
XP_008437961.1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (474 aa)
           
  0.618
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (11%) [HD]