STRINGSTRING
XP_008438623.1 protein (Cucumis melo) - STRING interaction network
"XP_008438623.1" - VAN3-binding protein-like in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438623.1VAN3-binding protein-like; Uncharacterized protein LOC103483679 (473 aa)    
Predicted Functional Partners:
XP_008439451.1
Uncharacterized protein LOC103484250; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (275 aa)
       
 
  0.549
XP_008453099.1
Polygalacturonase 1 beta-like protein 3; Probable polygalacturonase non-catalytic subunit JP650 (648 aa)
           
  0.545
XP_008439320.1
ABC transporter C family member 10 (1479 aa)
           
  0.544
XP_008466458.1
Probable nucleoredoxin 2 isoform X1 (412 aa)
           
  0.543
XP_008451600.1
Translocator protein homolog (191 aa)
           
  0.543
XP_008448256.1
Probable aminotransferase TAT2 (422 aa)
           
  0.543
XP_008448276.1
(R,S)-reticuline 7-O-methyltransferase-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family (392 aa)
           
  0.420
XP_008461708.1
Probable methyltransferase PMT11 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (678 aa)
           
  0.418
XP_008441393.1
Probable methyltransferase PMT11 (676 aa)
           
  0.418
XP_008440339.1
Peamaclein-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (94 aa)
           
  0.418
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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