STRINGSTRING
XP_008438627.1 protein (Cucumis melo) - STRING interaction network
"XP_008438627.1" - Leucine-rich repeat extensin-like protein 6 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438627.1Leucine-rich repeat extensin-like protein 6 (373 aa)    
Predicted Functional Partners:
XP_008455958.1
Fasciclin-like arabinogalactan protein 7 (263 aa)
     
   
  0.704
XP_008455511.1
Fasciclin-like arabinogalactan protein 7 (255 aa)
     
   
  0.704
XP_008442660.1
Non-classical arabinogalactan protein 31; Pistil-specific extensin-like protein (245 aa)
     
   
  0.631
XP_008439849.1
Non-classical arabinogalactan protein 31-like; Pistil-specific extensin-like protein (271 aa)
     
   
  0.631
XP_008461969.1
Extensin-3-like (260 aa)
 
 
   
  0.614
XP_008446183.1
High affinity nitrate transporter 2.5 (505 aa)
           
  0.580
XP_008450315.1
Fasciclin-like arabinogalactan protein 17 (466 aa)
     
   
  0.491
XP_008442961.1
Fasciclin-like arabinogalactan protein 15; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 17 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (465 aa)
     
   
  0.491
XP_008457946.1
Proline-rich protein 4-like (442 aa)
           
  0.485
XP_008447985.1
Proline-rich protein 4-like (365 aa)
           
  0.485
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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