STRINGSTRING
XP_008438640.1 protein (Cucumis melo) - STRING interaction network
"XP_008438640.1" - Protein RDM1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438640.1Protein RDM1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (174 aa)    
Predicted Functional Partners:
XP_008466829.1
Uncharacterized protein LOC103504141 (408 aa)
       
 
  0.951
XP_008437605.1
Protein DEFECTIVE IN MERISTEM SILENCING 3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (424 aa)
       
 
  0.951
XP_008456539.1
Protein RNA-directed DNA methylation 3; Transcription elongation factor SPT5 (1288 aa)
           
  0.936
XP_008448514.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1837 aa)
       
 
  0.909
XP_008443541.1
DNA (cytosine-5)-methyltransferase DRM2 isoform X1 (586 aa)
       
 
  0.904
XP_008460986.1
Protein CHROMATIN REMODELING 35-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (903 aa)
       
 
  0.888
XP_008462434.1
Protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns (285 aa)
           
  0.878
XP_008449865.1
Protein argonaute 4; Belongs to the argonaute family (915 aa)
       
 
  0.874
XP_008453109.1
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1117 aa)
           
  0.855
XP_008445598.1
Endoribonuclease Dicer homolog 3; Belongs to the helicase family. Dicer subfamily (1645 aa)
           
  0.854
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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