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XP_008438696.1 protein (Cucumis melo) - STRING interaction network
"XP_008438696.1" - ARM REPEAT PROTEIN INTERACTING WITH ABF2 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438696.1ARM REPEAT PROTEIN INTERACTING WITH ABF2 (703 aa)    
Predicted Functional Partners:
XP_008449590.1
Serine/threonine-protein kinase Nek5 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (971 aa)
       
      0.691
XP_008460505.1
Microsomal glutathione S-transferase 3 (145 aa)
           
  0.631
XP_008461526.1
CDT1-like protein b (619 aa)
       
 
  0.628
XP_008455861.1
CDT1-like protein b; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (623 aa)
       
 
  0.628
XP_008447443.1
CDT1-like protein a, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (607 aa)
       
 
  0.628
XP_008444530.1
Transcription factor TCP2-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (471 aa)
       
 
  0.600
XP_008439614.1
Transcription factor TCP2-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (452 aa)
       
 
  0.600
XP_008461207.1
AP2-like ethylene-responsive transcription factor At1g16060; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (366 aa)
       
      0.593
XP_008443823.1
AP2-like ethylene-responsive transcription factor At1g16060 (365 aa)
       
      0.593
XP_008451445.1
Uncharacterized protein LOC103492739 isoform X1 (793 aa)
           
  0.581
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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