STRINGSTRING
XP_008438700.1 protein (Cucumis melo) - STRING interaction network
"XP_008438700.1" - Putative methyltransferase C9orf114 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
XP_008438700.1Putative methyltransferase C9orf114; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (368 aa)    
Predicted Functional Partners:
XP_008453579.1
U3 small nucleolar RNA-associated protein 25 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (711 aa)
     
   
  0.978
XP_008454886.1
H/ACA ribonucleoprotein complex subunit 2-like protein (159 aa)
     
      0.954
XP_008465711.1
U3 small nucleolar ribonucleoprotein protein IMP4 (293 aa)
     
   
  0.940
XP_008454852.1
LOW QUALITY PROTEIN- ribosome production factor 2 homolog; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- substituted 1 base at 1 genomic stop codon (327 aa)
     
      0.869
XP_008461974.1
Bystin isoform X1; Bystin (442 aa)
     
   
  0.868
XP_008467285.1
Probable rRNA-processing protein EBP2 homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (307 aa)
     
        0.866
XP_008462502.1
WD repeat-containing protein 3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (941 aa)
     
        0.866
XP_008460905.1
mRNA turnover protein 4 homolog (136 aa)
     
        0.866
WD40
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (723 aa)
     
        0.866
XP_008458840.1
pre-rRNA-processing protein ESF2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns (377 aa)
     
        0.866
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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