STRINGSTRING
XP_008438731.1 protein (Cucumis melo) - STRING interaction network
"XP_008438731.1" - BTB/POZ and MATH domain-containing protein 2 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438731.1BTB/POZ and MATH domain-containing protein 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (408 aa)    
Predicted Functional Partners:
XP_008462833.1
SUMO-conjugating enzyme SCE1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 12 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns; Belongs to the ubiquitin-conjugating enzyme family (160 aa)
       
      0.698
XP_008443419.1
cullin-3A-like; Belongs to the cullin family (733 aa)
     
 
  0.669
XP_008458472.1
Cullin-1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 11 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns; Belongs to the cullin family (744 aa)
     
 
  0.642
XP_008438859.1
Cullin-1-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns; Belongs to the cullin family (770 aa)
     
 
  0.642
XP_008448309.1
Switch 2 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (878 aa)
       
 
  0.602
XP_008457028.1
TATA-binding protein-associated factor BTAF1 (2052 aa)
     
   
  0.562
XP_008438943.1
Bromodomain and WD repeat-containing protein 1 isoform X1 (1727 aa)
     
 
  0.490
XP_008459457.1
Casein kinase I isoform delta-like; Belongs to the protein kinase superfamily (477 aa)
           
  0.420
XP_008447619.1
Casein kinase I; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (470 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (9%) [HD]