STRINGSTRING
XP_008438739.1 protein (Cucumis melo) - STRING interaction network
"XP_008438739.1" - Uncharacterized protein LOC103483760 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438739.1Uncharacterized protein LOC103483760 (169 aa)    
Predicted Functional Partners:
XP_008465865.1
Remorin (193 aa)
     
   
  0.812
XP_008457492.1
Inner membrane protein PPF-1, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (447 aa)
           
  0.572
XP_008438374.1
Serine/threonine-protein kinase HT1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (251 aa)
           
  0.485
XP_008454329.1
Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial-like; Late embryogenesis abundant protein Lea5-A-like (85 aa)
           
  0.469
XP_008451558.1
Indole-3-acetic acid-induced protein ARG2-like (105 aa)
           
  0.469
XP_008438620.1
Early light-induced protein 1, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 73 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (192 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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