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XP_008438779.1 protein (Cucumis melo) - STRING interaction network
"XP_008438779.1" - Chromatin structure-remodeling complex protein SYD isoform X1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
XP_008438779.1Chromatin structure-remodeling complex protein SYD isoform X1 (3309 aa)    
Predicted Functional Partners:
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
0.975
XP_008453382.1
Actin-related protein 4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns; Belongs to the actin family (445 aa)
     
 
  0.965
XP_008453742.1
RNA polymerase-associated protein RTF1 homolog (660 aa)
     
 
  0.959
XP_008457275.1
High mobility group B protein 15 (421 aa)
     
 
  0.958
XP_008452910.1
High mobility group B protein 9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (324 aa)
     
 
  0.958
XP_008439008.1
Chromatin structure-remodeling complex protein BSH isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (240 aa)
     
 
  0.956
XP_008441794.1
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII) (1615 aa)
     
 
  0.956
XP_008450914.1
RNA polymerase-associated protein CTR9 homolog (1077 aa)
     
 
  0.949
XP_008439562.1
FACT complex subunit SPT16; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (1073 aa)
     
 
  0.945
XP_008443065.1
LOW QUALITY PROTEIN- protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 1 base in 1 codon (2117 aa)
     
 
0.932
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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