STRINGSTRING
XP_008438859.1 protein (Cucumis melo) - STRING interaction network
"XP_008438859.1" - Cullin-1-like isoform X1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438859.1Cullin-1-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns; Belongs to the cullin family (770 aa)    
Predicted Functional Partners:
XP_008452214.1
Cullin-associated NEDD8-dissociated protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (1218 aa)
     
 
  0.940
XP_008452951.1
BTB/POZ domain-containing protein At2g30600 (806 aa)
     
 
  0.935
XP_008463225.1
COP9 signalosome complex subunit 5b-like (78 aa)
     
 
  0.913
XP_008445090.1
COP9 signalosome complex subunit 5b-like (365 aa)
     
 
  0.913
XP_008459863.1
RING-box protein 1a-like isoform X1 (117 aa)
     
 
  0.912
XP_008450927.1
RING-box protein 1a (117 aa)
     
 
  0.912
XP_008447053.1
NEDD8-conjugating enzyme Ubc12-like; Belongs to the ubiquitin-conjugating enzyme family (183 aa)
       
 
  0.911
XP_008440154.1
NEDD8-conjugating enzyme Ubc12; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 31 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns; Belongs to the ubiquitin-conjugating enzyme family (183 aa)
       
 
  0.911
XP_008438090.1
COP9 signalosome complex subunit 1 (450 aa)
     
 
  0.900
XP_008444949.1
DNA damage-binding protein 1 (1091 aa)
     
 
  0.893
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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