STRINGSTRING
XP_008438883.1 protein (Cucumis melo) - STRING interaction network
"XP_008438883.1" - Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438883.1Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 20 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns (82 aa)    
Predicted Functional Partners:
XP_008465377.1
40S ribosomal protein S27-2-like (86 aa)
     
 
  0.991
XP_008462725.1
40S ribosomal protein S24-1; Belongs to the eukaryotic ribosomal protein eS24 family (137 aa)
     
 
  0.989
XP_008455742.1
40S ribosomal protein S24; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 73 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein eS24 family (137 aa)
     
 
  0.989
XP_008455614.1
60S acidic ribosomal protein P1-like; Belongs to the eukaryotic ribosomal protein P1/P2 family (108 aa)
     
 
  0.989
XP_008437779.1
60S acidic ribosomal protein P1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 229 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein P1/P2 family (113 aa)
     
 
  0.989
XP_008439254.1
60S ribosomal protein L36; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 83 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein eL36 family (110 aa)
     
 
  0.989
XP_008436991.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 87 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns (110 aa)
     
 
  0.989
XP_008456941.1
40S ribosomal protein S26; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 13 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns; Belongs to the eukaryotic ribosomal protein eS26 family (129 aa)
     
 
  0.989
XP_008456772.1
40S ribosomal protein S26-3-like; Belongs to the eukaryotic ribosomal protein eS26 family (129 aa)
     
 
  0.989
XP_008462521.1
60S ribosomal protein L24 (164 aa)
     
 
  0.988
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (6%) [HD]