STRINGSTRING
XP_008438910.1 protein (Cucumis melo) - STRING interaction network
"XP_008438910.1" - Ethylene-responsive transcription factor RAP2-3 isoform X1 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438910.1Ethylene-responsive transcription factor RAP2-3 isoform X1 (228 aa)    
Predicted Functional Partners:
XP_008437617.1
acyl-CoA-binding domain-containing protein 1 isoform X1 (356 aa)
       
 
  0.755
XP_008442546.1
E3 ubiquitin-protein ligase PRT6 isoform X1; Uncharacterized protein LOC103486385 (2059 aa)
           
  0.695
XP_008454338.1
acyl-CoA-binding domain-containing protein 4-like isoform X1 (671 aa)
       
 
  0.686
XP_008453619.1
Truncated transcription factor CAULIFLOWER A isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (261 aa)
           
  0.592
XP_008464441.1
SNF1-related protein kinase regulatory subunit gamma-1 (414 aa)
           
  0.580
XP_008443782.1
SNF1-related protein kinase regulatory subunit gamma-1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (416 aa)
           
  0.580
XP_008465296.1
acyl-CoA-binding domain-containing protein 4-like (89 aa)
       
 
  0.503
XP_008440801.1
Histone H1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 19 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns (208 aa)
           
  0.459
XP_008465567.1
High mobility group B protein 7 (153 aa)
           
  0.420
XP_008454569.1
Photosynthetic NDH subunit of lumenal location 3, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (215 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (10%) [HD]