STRINGSTRING
XP_008438913.1 protein (Cucumis melo) - STRING interaction network
"XP_008438913.1" - Probable polygalacturonase isoform X1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438913.1Probable polygalacturonase isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (458 aa)    
Predicted Functional Partners:
XP_008457627.1
Probable polygalacturonase At1g80170 isoform X1; Belongs to the glycosyl hydrolase 28 family (231 aa)
   
     
  0.718
XP_008450599.1
F-box/LRR-repeat protein 3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (640 aa)
           
  0.694
XP_008447420.1
Probable pectate lyase 4 (376 aa)
         
  0.625
XP_008439120.1
Pectate lyase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (382 aa)
         
  0.625
XP_008454037.1
Heparan-alpha-glucosaminide N-acetyltransferase (490 aa)
           
  0.598
XP_008453983.1
F-box protein PP2-B13-like (299 aa)
           
  0.598
XP_008453628.1
F-box protein PP2-B10-like (310 aa)
           
  0.598
XP_008442720.1
Heparan-alpha-glucosaminide N-acetyltransferase-like (493 aa)
           
  0.598
XP_008454292.1
Histone H2A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 61 ESTs, 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns; Belongs to the histone H2A family (141 aa)
           
  0.594
XP_008454118.1
Serine/threonine-protein phosphatase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (320 aa)
           
  0.594
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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