STRINGSTRING
XP_008438922.1 protein (Cucumis melo) - STRING interaction network
"XP_008438922.1" - GATA transcription factor 16-like in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438922.1GATA transcription factor 16-like (147 aa)    
Predicted Functional Partners:
XP_008454272.1
Periodic tryptophan protein 2 homolog (892 aa)
     
        0.737
XP_008460905.1
mRNA turnover protein 4 homolog (136 aa)
     
        0.682
XP_008456177.1
Pathogenesis-related homeodomain protein isoform X1 (1062 aa)
     
 
  0.608
XP_008452629.1
Uncharacterized protein LOC103493592 (88 aa)
           
  0.605
XP_008460947.1
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (852 aa)
     
        0.407
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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