STRINGSTRING
XP_008438926.1 protein (Cucumis melo) - STRING interaction network
"XP_008438926.1" - Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438926.1Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial (694 aa)    
Predicted Functional Partners:
XP_008439132.1
Probable protein phosphatase 2C 75 isoform X1 (418 aa)
           
  0.590
XP_008437822.1
Protein ARABIDILLO 1-like (948 aa)
     
   
  0.588
XP_008464653.1
DEAD-box ATP-dependent RNA helicase 53 (624 aa)
     
 
  0.579
XP_008460215.1
Protein CHROMATIN REMODELING 19 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns (741 aa)
     
   
  0.571
XP_008443467.1
CRM-domain containing factor CFM2, chloroplastic isoform X1; Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 (1032 aa)
           
  0.571
XP_008448058.1
Uncharacterized protein LOC103490350; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (284 aa)
           
  0.555
XP_008441640.1
Ethylene-responsive transcription factor ABI4 (308 aa)
           
  0.491
XP_008464390.1
Exosome complex component RRP4-like (327 aa)
     
   
  0.451
XP_008442058.1
Exosome complex component RRP4 isoform X1 (336 aa)
     
   
  0.451
XP_008459997.1
Protein TSS; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 mRNAs, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns (1866 aa)
     
   
  0.427
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (7%) [HD]