STRINGSTRING
XP_008438943.1 protein (Cucumis melo) - STRING interaction network
"XP_008438943.1" - Bromodomain and WD repeat-containing protein 1 isoform X1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438943.1Bromodomain and WD repeat-containing protein 1 isoform X1 (1727 aa)    
Predicted Functional Partners:
XP_008458065.1
Transcription initiation factor TFIID subunit 1 isoform X1 (1902 aa)
     
 
  0.930
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
  0.888
XP_008442546.1
E3 ubiquitin-protein ligase PRT6 isoform X1; Uncharacterized protein LOC103486385 (2059 aa)
     
   
  0.872
XP_008451668.1
Sister chromatid cohesion protein; nipped-B-like protein isoform X1 (1823 aa)
     
        0.866
XP_008463366.1
Anaphase-promoting complex subunit 4 (774 aa)
     
 
  0.847
XP_008441780.1
Protein CHROMATIN REMODELING 20 isoform X1; Transcriptional regulator ATRX isoform X1 (1490 aa)
     
 
  0.835
XP_008444949.1
DNA damage-binding protein 1 (1091 aa)
     
 
  0.782
XP_008444061.1
DNA ligase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1405 aa)
     
 
  0.683
XP_008460594.1
Mitotic spindle checkpoint protein MAD1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (727 aa)
       
 
  0.677
XP_008465673.1
Uncharacterized protein LOC103503311 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1395 aa)
     
 
  0.672
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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