STRINGSTRING
XP_008438988.1 protein (Cucumis melo) - STRING interaction network
"XP_008438988.1" - Signal recognition particle 19 kDa protein in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008438988.1Signal recognition particle 19 kDa protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (134 aa)    
Predicted Functional Partners:
XP_008444601.1
Signal recognition particle 14 kDa protein (118 aa)
     
 
  0.998
XP_008449345.1
Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (103 aa)
     
 
  0.997
XP_008450345.1
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (594 aa)
     
 
  0.991
XP_008446092.1
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (667 aa)
     
 
  0.988
XP_008453452.1
Guanine nucleotide-binding protein subunit beta-like protein (327 aa)
     
      0.961
XP_008452010.1
40S ribosomal protein S10-1-like (182 aa)
       
      0.960
XP_008454178.1
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein); Belongs to the GTP-binding SRP family. SRP54 subfamily (495 aa)
     
 
  0.957
XP_008443016.1
60S ribosomal protein L21-1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 40 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (164 aa)
   
      0.945
XP_008462577.1
Signal recognition particle 54 kDa protein, chloroplastic (572 aa)
     
 
  0.938
XP_008438084.1
Cell division protein FtsY homolog, chloroplastic isoform X1 (416 aa)
     
 
  0.938
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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