STRINGSTRING
XP_008439004.1 protein (Cucumis melo) - STRING interaction network
"XP_008439004.1" - LOW QUALITY PROTEIN: late embryogenesis abundant protein D-29 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439004.1LOW QUALITY PROTEIN- late embryogenesis abundant protein D-29; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 2 bases in 1 codon (347 aa)    
Predicted Functional Partners:
XP_008461081.1
Late embryogenesis abundant protein D-7 (128 aa)
     
   
  0.880
XP_008448704.1
Uncharacterized protein LOC103490795; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (121 aa)
     
   
  0.874
XP_008439583.1
CSC1-like protein ERD4; Uncharacterized membrane protein C2G11.09 (725 aa)
           
  0.854
XP_008457211.1
Uncharacterized protein LOC103496938; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (316 aa)
           
  0.853
XP_008452109.1
Dehydrin DHN1; Belongs to the plant dehydrin family (177 aa)
     
   
  0.745
XP_008466539.1
Mannan endo-1,4-beta-mannosidase 7-like; Belongs to the glycosyl hydrolase 5 (cellulase A) family (476 aa)
           
  0.723
XP_008440745.1
Mannan endo-1,4-beta-mannosidase 7; Belongs to the glycosyl hydrolase 5 (cellulase A) family (418 aa)
           
  0.723
XP_008460707.1
Late embryogenesis abundant protein 1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (96 aa)
           
  0.705
XP_008452845.1
Uncharacterized protein LOC103493743 (151 aa)
     
        0.705
XP_008464882.1
Phosphoprotein ECPP44-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 22 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns; Belongs to the plant dehydrin family (237 aa)
           
  0.704
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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