STRINGSTRING
XP_008439022.1 protein (Cucumis melo) - STRING interaction network
"XP_008439022.1" - Protein SMG9-like isoform X1 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439022.1Protein SMG9-like isoform X1 (433 aa)    
Predicted Functional Partners:
XP_008465419.1
Uncharacterized protein LOC103503038 (1231 aa)
       
 
  0.979
XP_008448746.1
LOW QUALITY PROTEIN- regulator of nonsense transcripts 1 homolog; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (1268 aa)
     
 
  0.937
XP_008450386.1
RNA-binding protein 8A-B (197 aa)
       
 
  0.897
XP_008463566.1
LOW QUALITY PROTEIN- regulator of nonsense transcripts UPF2; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 2 bases in 1 codon (1194 aa)
           
  0.761
XP_008460671.1
Serine/threonine-protein kinase TOR-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (119 aa)
       
 
  0.748
XP_008459237.1
Serine/threonine-protein kinase SMG1-like (3791 aa)
       
 
  0.748
XP_008455057.1
Serine/threonine-protein kinase TOR; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns (2470 aa)
       
 
  0.748
XP_008450385.1
Nuclear cap-binding protein subunit 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (864 aa)
     
   
  0.737
XP_008459659.1
Regulator of nonsense transcripts UPF3 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (513 aa)
           
  0.733
XP_008443745.1
Uncharacterized protein LOC103487258 (2404 aa)
           
  0.726
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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