STRINGSTRING
XP_008439032.1 protein (Cucumis melo) - STRING interaction network
"XP_008439032.1" - Uncharacterized protein LOC103483941 isoform X1 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439032.1Uncharacterized protein LOC103483941 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 23 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns (125 aa)    
Predicted Functional Partners:
XP_008454886.1
H/ACA ribonucleoprotein complex subunit 2-like protein (159 aa)
     
        0.862
XP_008461655.1
Serine/arginine-rich SC35-like splicing factor SCL30; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (280 aa)
     
        0.783
XP_008437464.1
Mitochondrial import inner membrane translocase subunit Tim13; Belongs to the small Tim family (87 aa)
     
        0.680
XP_008461352.1
Uncharacterized protein LOC103499958; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (90 aa)
     
        0.566
XP_008453205.1
Protein DCL, chloroplastic (232 aa)
     
        0.559
XP_008449001.1
RNA-binding protein pno1 (224 aa)
     
        0.499
XP_008437547.1
RNA-binding protein pno1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (224 aa)
     
        0.499
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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