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XP_008439058.1 protein (Cucumis melo) - STRING interaction network
"XP_008439058.1" - Splicing factor 3B subunit 4 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
XP_008439058.1Splicing factor 3B subunit 4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (379 aa)    
Predicted Functional Partners:
XP_008442733.1
Splicing factor 3A subunit 2 (341 aa)
     
 
  0.971
XP_008441819.1
Splicing factor 3B subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments (599 aa)
     
 
  0.940
XP_008457362.1
PHD finger-like domain-containing protein 5B; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (110 aa)
     
 
  0.938
XP_008462876.1
Splicing factor 3B subunit 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (1262 aa)
     
 
  0.937
XP_008456689.1
116 kDa U5 small nuclear ribonucleoprotein component-like (988 aa)
     
 
  0.929
XP_008439504.1
Small nuclear ribonucleoprotein-associated proteins B and B’-like (284 aa)
     
 
  0.928
XP_008459932.1
U2 small nuclear ribonucleoprotein A’; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns (279 aa)
     
 
  0.923
XP_008461619.1
Splicing factor 3B subunit 3-like (1214 aa)
     
 
  0.921
XP_008443005.1
pre-mRNA-splicing factor RSE1 isoform X1 (1376 aa)
     
 
  0.921
XP_008439709.1
Uncharacterized protein At4g14342 (87 aa)
     
 
  0.913
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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