STRINGSTRING
XP_008439116.1 protein (Cucumis melo) - STRING interaction network
"XP_008439116.1" - BTB/POZ and TAZ domain-containing protein 1-like in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439116.1BTB/POZ and TAZ domain-containing protein 1-like (344 aa)    
Predicted Functional Partners:
XP_008460374.1
FHA domain-containing protein FHA2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns (338 aa)
       
 
  0.891
XP_008453710.1
Zinc finger CCCH domain-containing protein 44-like isoform X1 (1259 aa)
     
 
  0.811
XP_008448056.1
Zinc finger CCCH domain-containing protein 19 isoform X1 (1774 aa)
     
 
  0.811
XP_008452231.1
Uncharacterized protein At5g08430 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (753 aa)
     
 
  0.744
XP_008456407.1
Small ubiquitin-related modifier 1 (100 aa)
       
 
  0.725
XP_008449477.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (106 aa)
       
 
  0.725
XP_008449142.1
Small ubiquitin-related modifier 1-like (166 aa)
       
 
  0.725
XP_008464948.1
Transcription factor bHLH106-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (243 aa)
       
 
  0.708
XP_008456426.1
Transcription factor bHLH30-like isoform X1 (256 aa)
       
 
  0.708
XP_008444933.1
Transcription factor bHLH30-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (238 aa)
       
 
  0.708
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (8%) [HD]