STRINGSTRING
XP_008439123.1 protein (Cucumis melo) - STRING interaction network
"XP_008439123.1" - Sulfated surface glycoprotein 185-like in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439123.1Sulfated surface glycoprotein 185-like (247 aa)    
Predicted Functional Partners:
XP_008447452.1
Uncharacterized protein LOC103489896 (313 aa)
           
  0.722
XP_008437197.1
Protein HOTHEAD (578 aa)
           
  0.629
XP_008440812.1
Uncharacterized protein LOC103485120 (504 aa)
           
  0.621
XP_008437349.1
Late embryogenesis abundant protein At1g64065; Uncharacterized protein LOC103482793 (209 aa)
           
  0.615
XP_008454656.1
Uncharacterized protein LOC103495008; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (338 aa)
           
  0.609
XP_008463228.1
Protein yippee-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns; Belongs to the yippee family (130 aa)
           
  0.597
XP_008449254.1
Protein yippee-like; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon; Belongs to the yippee family (129 aa)
           
  0.597
XP_008441452.1
Protein yippee-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 18 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns; Belongs to the yippee family (134 aa)
           
  0.597
XP_008467153.1
dnaJ homolog subfamily B member 7 isoform X1 (143 aa)
           
  0.572
8A07
Aspartyl protease AED3; Aspartic proteinase nepenthesin-1; Belongs to the peptidase A1 family (444 aa)
     
   
  0.567
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (9%) [HD]