STRINGSTRING
XP_008439159.1 protein (Cucumis melo) - STRING interaction network
"XP_008439159.1" - Uncharacterized protein LOC103484039 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439159.1Uncharacterized protein LOC103484039; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (235 aa)    
Predicted Functional Partners:
XP_008453213.1
Photosynthetic NDH subunit of subcomplex B 4, chloroplastic; Uncharacterized protein LOC103494001 (177 aa)
     
        0.866
XP_008438595.1
Photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2; Uncharacterized protein LOC103483655 (223 aa)
     
        0.866
XP_008440700.1
Uncharacterized protein LOC103485040 (160 aa)
     
        0.772
XP_008467249.1
Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (623 aa)
           
  0.769
XP_008467244.1
ABC transporter B family member 28 (712 aa)
           
  0.769
XP_008448915.1
Transcription termination/antitermination protein NusG; Uncharacterized protein LOC103490936 (326 aa)
     
   
  0.711
XP_008463743.1
Polynucleotide 3’-phosphatase ZDP; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (391 aa)
     
   
  0.699
XP_008455096.1
UPF0603 protein At1g54780, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (296 aa)
     
        0.674
XP_008437196.1
Uncharacterized protein LOC103482698 (644 aa)
           
  0.658
XP_008439397.1
Sorbitol dehydrogenase-like (314 aa)
           
  0.630
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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