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XP_008439178.1 protein (Cucumis melo) - STRING interaction network
"XP_008439178.1" - DNA-directed RNA polymerases II, IV and V subunit 6A in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439178.1DNA-directed RNA polymerases II, IV and V subunit 6A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (143 aa)    
Predicted Functional Partners:
XP_008457416.1
DNA-directed RNA polymerases I and III subunit RPAC2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns (108 aa)
     
 
  0.992
XP_008456558.1
DNA-directed RNA polymerases I, II, and III subunit RPABC5; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 26 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns (71 aa)
   
 
  0.991
XP_008446194.1
DNA-directed RNA polymerase subunit 10-like protein (71 aa)
   
 
  0.991
XP_008449040.1
DNA-directed RNA polymerases I and III subunit RPAC1 (391 aa)
   
 
  0.989
XP_008445334.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (116 aa)
     
 
  0.981
XP_008459046.1
DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (205 aa)
     
 
  0.975
XP_008456369.1
DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (207 aa)
     
 
  0.975
XP_008451219.1
DNA-directed RNA polymerases II and IV subunit 5A (207 aa)
     
 
  0.975
XP_008461807.1
DNA-directed RNA polymerases II, IV and V subunit 11; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (116 aa)
     
 
  0.974
XP_008461312.1
DNA-directed RNA polymerases II, IV and V subunit 11-like (116 aa)
     
 
  0.974
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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