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XP_008439188.1 protein (Cucumis melo) - STRING interaction network
"XP_008439188.1" - CEN-like protein 1 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439188.1CEN-like protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 2 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (185 aa)    
Predicted Functional Partners:
XP_008457304.1
28S ribosomal protein S29, mitochondrial (454 aa)
     
 
  0.902
XP_008441337.1
50S ribosomal protein L27, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns (183 aa)
     
 
  0.807
XP_008464053.1
50S ribosomal protein L4, chloroplastic isoform X1 (297 aa)
     
 
  0.799
XP_008440040.1
39S ribosomal protein L4, mitochondrial (331 aa)
     
 
  0.799
XP_008464035.1
Uncharacterized protein LOC103502018; Belongs to the bacterial ribosomal protein bS18 family (273 aa)
     
 
  0.798
XP_008451408.1
54S ribosomal protein L17, mitochondrial isoform X1 (235 aa)
     
      0.785
XP_008453113.1
39S ribosomal protein L47, mitochondrial (143 aa)
     
      0.784
XP_008450874.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns (130 aa)
     
 
  0.782
XP_008462792.1
Probable 37S ribosomal protein S5, mitochondrial; RNA-binding protein 25; Belongs to the universal ribosomal protein uS5 family (500 aa)
     
      0.772
XP_008455593.1
Uncharacterized protein LOC103495731 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns (174 aa)
     
 
  0.767
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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