STRINGSTRING
XP_008439197.1 protein (Cucumis melo) - STRING interaction network
"XP_008439197.1" - DNA-(apurinic or apyrimidinic site) lyase in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439197.1DNA-(apurinic or apyrimidinic site) lyase (360 aa)    
Predicted Functional Partners:
XP_008463743.1
Polynucleotide 3’-phosphatase ZDP; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (391 aa)
   
 
  0.952
XP_008459934.1
A/G-specific adenine DNA glycosylase (464 aa)
     
 
  0.889
XP_008442389.1
Transcription factor bHLH140 (747 aa)
   
 
  0.884
XP_008442043.1
Endonuclease 1 (302 aa)
           
  0.853
XP_008460559.1
methyl-CpG-binding domain protein 4-like protein; Uncharacterized protein LOC103499353 (488 aa)
           
  0.852
XP_008449115.1
DNA mismatch repair protein MSH5 isoform X1 (824 aa)
   
   
  0.790
XP_008465894.1
LOW QUALITY PROTEIN- DNA repair endonuclease UVH1; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon (1020 aa)
     
 
  0.779
XP_008466739.1
N-glycosylase/DNA lyase OGG1 (406 aa)
   
 
  0.768
XP_008444707.1
Deoxyuridine 5’-triphosphate nucleotidohydrolase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (257 aa)
   
 
  0.760
XP_008444061.1
DNA ligase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (1405 aa)
   
   
  0.738
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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