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XP_008439199.1 protein (Cucumis melo) - STRING interaction network
"XP_008439199.1" - methyl-CpG-binding domain-containing protein 13 isoform X1 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439199.1methyl-CpG-binding domain-containing protein 13 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (239 aa)    
Predicted Functional Partners:
XP_008451407.1
methyl-CpG-binding domain-containing protein 4 (180 aa)
           
  0.720
XP_008457481.1
methyl-CpG-binding domain-containing protein 5; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (280 aa)
           
  0.528
XP_008464858.1
Pentatricopeptide repeat-containing protein At5g42310, mitochondrial (720 aa)
           
  0.483
XP_008465236.1
Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (411 aa)
           
  0.422
XP_008450795.1
methyl-CpG-binding domain-containing protein 2-like (341 aa)
           
  0.420
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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