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XP_008439221.1 protein (Cucumis melo) - STRING interaction network
"XP_008439221.1" - 25.3 kDa vesicle transport protein isoform X1 in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439221.125.3 kDa vesicle transport protein isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns; Belongs to the synaptobrevin family (245 aa)    
Predicted Functional Partners:
XP_008442003.1
Membrin; Involved in transport of proteins from the cis/medial- Golgi to the trans-Golgi network (240 aa)
     
  0.988
XP_008441427.1
Syntaxin-81 (308 aa)
     
  0.984
XP_008463224.1
Syntaxin-31; Belongs to the syntaxin family (338 aa)
     
  0.982
XP_008445123.1
Syntaxin-32; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns; Belongs to the syntaxin family (338 aa)
     
  0.982
XP_008454511.1
Bet1-like SNARE 1-1 (123 aa)
     
  0.960
XP_008447527.1
Bet1-like SNARE 1-2 isoform X1 (128 aa)
     
  0.960
XP_008459773.1
Uncharacterized protein LOC103498806; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (293 aa)
       
  0.944
XP_008456753.1
Alpha-soluble NSF attachment protein 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 22 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (289 aa)
     
 
  0.924
XP_008448659.1
Syntaxin-22; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 17 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns; Belongs to the syntaxin family (274 aa)
     
 
  0.924
XP_008458826.1
Golgin candidate 6; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (911 aa)
     
 
  0.919
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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