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XP_008439230.1 protein (Cucumis melo) - STRING interaction network
"XP_008439230.1" - Lysine-specific demethylase REF6 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439230.1Lysine-specific demethylase REF6; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (1555 aa)    
Predicted Functional Partners:
XP_008462692.1
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 (1083 aa)
   
 
  0.920
XP_008438779.1
Chromatin structure-remodeling complex protein SYD isoform X1 (3309 aa)
     
 
  0.914
XP_008456177.1
Pathogenesis-related homeodomain protein isoform X1 (1062 aa)
     
 
  0.914
XP_008454560.1
Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (370 aa)
       
 
  0.910
XP_008457756.1
Histone-lysine N-methyltransferase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (923 aa)
     
 
  0.906
XP_008454284.1
Histone-lysine N-methyltransferase EZA1 isoform X1 (892 aa)
     
 
  0.906
XP_008438277.1
ATP synthase subunit delta’, mitochondrial (200 aa)
   
 
  0.901
XP_008440173.1
Histone-lysine N-methyltransferase SUVR5 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns (1493 aa)
     
 
  0.877
XP_008450857.1
WD-40 repeat-containing protein MSI4 (518 aa)
       
 
  0.876
XP_008447958.1
WD-40 repeat-containing protein MSI2-like (393 aa)
       
 
  0.876
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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