STRINGSTRING
XP_008439237.1 protein (Cucumis melo) - STRING interaction network
"XP_008439237.1" - Pectin acetylesterase in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439237.1Pectin acetylesterase; Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties (397 aa)    
Predicted Functional Partners:
XP_008437386.1
Probable polygalacturonase (445 aa)
     
   
  0.637
XP_008443532.1
Polygalacturonase At1g48100; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (477 aa)
           
  0.621
XP_008456949.1
expansin-A8-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (252 aa)
     
   
  0.619
XP_008456774.1
expansin-A8-like (244 aa)
     
   
  0.619
XP_008465167.1
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues; Belongs to the glycosyl hydrolase 16 family (296 aa)
     
   
  0.607
XP_008462680.1
pre-mRNA-splicing factor SPF27 homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (256 aa)
       
      0.590
XP_008438913.1
Probable polygalacturonase isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns (458 aa)
     
   
  0.587
XP_008443094.1
exo-poly-alpha-D-galacturonosidase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (466 aa)
           
  0.584
XP_008439105.1
Pectate lyase; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 8 ESTs, 40 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns (411 aa)
           
  0.575
XP_008462177.1
Aquaporin TIP2-1; Belongs to the MIP/aquaporin (TC 1.A.8) family (248 aa)
           
  0.570
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (6%) [HD]