STRINGSTRING
XP_008439264.1 protein (Cucumis melo) - STRING interaction network
"XP_008439264.1" - Putative transporter arsB in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439264.1Putative transporter arsB; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (546 aa)    
Predicted Functional Partners:
XP_008448623.1
26S proteasome non-ATPase regulatory subunit 13 homolog A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 20 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (386 aa)
           
  0.854
XP_008439431.1
Vacuolar-sorting receptor 6-like isoform X1 (628 aa)
           
  0.854
XP_008461938.1
Exocyst complex component SEC5A-like isoform X2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 9 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (1091 aa)
           
  0.630
XP_008444466.1
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine (1047 aa)
           
  0.616
XP_008449402.1
Putative transferase At1g60990, chloroplastic isoform X1; Dimethylglycine dehydrogenase, mitochondrial isoform X1 (412 aa)
     
   
  0.585
XP_008440909.1
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family (407 aa)
     
   
  0.585
XP_008458604.1
Low molecular weight phosphotyrosine protein phosphatase (249 aa)
   
   
  0.584
XP_008465743.1
Sucrose transport protein SUC3; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 3 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (606 aa)
     
   
  0.577
XP_008465544.1
Sucrose transport protein SUC8-like isoform X1 (528 aa)
     
   
  0.577
SUT4
Sucrose transport protein SUC4 isoform X1 (526 aa)
     
   
  0.577
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (6%) [HD]