STRINGSTRING
XP_008439311.1 protein (Cucumis melo) - STRING interaction network
"XP_008439311.1" - Uncharacterized protein PAM68-like in Cucumis melo
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439311.1Uncharacterized protein PAM68-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments (184 aa)    
Predicted Functional Partners:
XP_008452843.1
Pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (1113 aa)
     
        0.866
XP_008444981.1
RNA polymerase sigma factor sigC (560 aa)
     
        0.866
XP_008440039.1
Uncharacterized protein LOC103484635 (173 aa)
     
        0.865
XP_008465367.1
ATP-dependent DNA helicase At3g02060, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (827 aa)
     
        0.813
XP_008441976.1
Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5; Uncharacterized protein LOC103485977 (368 aa)
     
   
  0.788
XP_008443914.1
Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic; Uncharacterized protein LOC103487393 (251 aa)
   
        0.508
XP_008464319.1
psbP domain-containing protein 1, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (258 aa)
   
        0.459
XP_008452414.1
Uncharacterized protein LOC103493452; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (169 aa)
   
        0.458
XP_008461367.1
Photosystem II stability/assembly factor HCF136, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns (405 aa)
     
   
  0.437
XP_008454363.1
Protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (434 aa)
     
   
  0.429
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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