STRINGSTRING
XP_008439325.1 protein (Cucumis melo) - STRING interaction network
"XP_008439325.1" - Uncharacterized protein LOC103484145 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439325.1Uncharacterized protein LOC103484145; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (168 aa)    
Predicted Functional Partners:
XP_008466625.1
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family (204 aa)
     
      0.961
XP_008463780.1
50S ribosomal protein L13, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL13 family (248 aa)
     
      0.961
XP_008463697.1
30S ribosomal protein S20, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns (184 aa)
     
      0.961
XP_008461961.1
50S ribosomal protein L21, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns (208 aa)
     
      0.961
XP_008460096.1
50S ribosomal protein L3, chloroplastic; Belongs to the universal ribosomal protein uL3 family (293 aa)
     
      0.961
XP_008455762.1
50S ribosomal protein 5, chloroplastic (151 aa)
     
      0.961
XP_008439845.1
30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family (307 aa)
     
      0.961
XP_008439748.1
50S ribosomal protein L34, chloroplastic (155 aa)
     
      0.961
XP_008438004.1
50S ribosomal protein L5, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns (271 aa)
     
      0.961
XP_008461583.1
30S ribosomal protein 3, chloroplastic-like (192 aa)
     
      0.961
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (8%) [HD]