STRINGSTRING
XP_008439342.1 protein (Cucumis melo) - STRING interaction network
"XP_008439342.1" - Probable protein phosphatase 2C 76 in Cucumis melo
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439342.1Probable protein phosphatase 2C 76; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 4 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (353 aa)    
Predicted Functional Partners:
XP_008459831.1
Pentatricopeptide repeat-containing protein At1g05600 isoform X1 (497 aa)
           
  0.873
XP_008456012.1
Reticulon-4-interacting protein 1, mitochondrial; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (365 aa)
           
  0.847
XP_008437464.1
Mitochondrial import inner membrane translocase subunit Tim13; Belongs to the small Tim family (87 aa)
           
  0.847
XP_008457564.1
The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- deleted 1 base in 1 codon (242 aa)
       
 
  0.785
XP_008456276.1
Myosin-binding protein 1-like; Uncharacterized protein LOC103496267 (905 aa)
           
  0.704
XP_008448644.1
Probable inactive shikimate kinase like 2, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (383 aa)
           
  0.631
XP_008465922.1
Expansin-like B1 (273 aa)
           
  0.630
XP_008452706.1
Abscisic acid receptor PYL2 isoform X1 (191 aa)
       
 
  0.623
XP_008453765.1
UBP1-associated protein 2B-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (347 aa)
           
  0.590
XP_008455816.1
Serine/threonine-protein kinase Nek2-like (607 aa)
           
  0.587
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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