STRINGSTRING
XP_008439347.1 protein (Cucumis melo) - STRING interaction network
"XP_008439347.1" - Probable ubiquitin-like-specific protease 2A in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439347.1Probable ubiquitin-like-specific protease 2A (274 aa)    
Predicted Functional Partners:
XP_008456407.1
Small ubiquitin-related modifier 1 (100 aa)
     
 
  0.767
XP_008449477.1
Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (106 aa)
     
 
  0.767
XP_008449142.1
Small ubiquitin-related modifier 1-like (166 aa)
     
 
  0.767
XP_008462833.1
SUMO-conjugating enzyme SCE1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 12 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns; Belongs to the ubiquitin-conjugating enzyme family (160 aa)
       
 
  0.724
XP_008460981.1
SUMO-activating enzyme subunit 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (641 aa)
     
 
  0.720
XP_008461344.1
Structural maintenance of chromosomes protein 5 isoform X2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (1053 aa)
     
 
  0.676
XP_008463706.1
E3 SUMO-protein ligase MMS21 (248 aa)
     
 
  0.643
XP_008439894.1
SUMO-activating enzyme subunit 1B-1 isoform X1 (321 aa)
       
 
  0.621
XP_008463667.1
E3 SUMO-protein ligase SIZ1 (878 aa)
     
 
  0.617
XP_008437346.1
E4 SUMO-protein ligase PIAL2 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns (857 aa)
     
 
  0.617
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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