STRINGSTRING
XP_008439415.1 protein (Cucumis melo) - STRING interaction network
"XP_008439415.1" - Ycf3-interacting protein 1, chloroplastic isoform X1 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439415.1Ycf3-interacting protein 1, chloroplastic isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 9 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (254 aa)    
Predicted Functional Partners:
XP_008461469.1
Uncharacterized protein ycf37 isoform X1 (313 aa)
     
   
  0.905
XP_008463780.1
50S ribosomal protein L13, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns; Belongs to the universal ribosomal protein uL13 family (248 aa)
     
        0.866
XP_008462747.1
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1171 aa)
     
        0.866
XP_008457580.1
Uncharacterized protein LOC103497244 (137 aa)
     
        0.866
XP_008457444.1
Thylakoid lumenal 16.5 kDa protein, chloroplastic (234 aa)
     
        0.866
XP_008455762.1
50S ribosomal protein 5, chloroplastic (151 aa)
     
        0.866
XP_008448323.1
Probable alanine--tRNA ligase, chloroplastic; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family (999 aa)
     
        0.866
XP_008445960.1
Protein translocase subunit SecA; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 1 base in 1 codon; Belongs to the SecA family (1025 aa)
     
        0.866
XP_008443834.1
50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 9 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns; Belongs to the bacterial ribosomal protein bL35 family (151 aa)
     
        0.866
XP_008443511.1
Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic (447 aa)
     
        0.866
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (6%) [HD]