STRINGSTRING
XP_008439431.1 protein (Cucumis melo) - STRING interaction network
"XP_008439431.1" - Vacuolar-sorting receptor 6-like isoform X1 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439431.1Vacuolar-sorting receptor 6-like isoform X1 (628 aa)    
Predicted Functional Partners:
XP_008448623.1
26S proteasome non-ATPase regulatory subunit 13 homolog A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 20 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (386 aa)
           
  0.854
XP_008439264.1
Putative transporter arsB; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns (546 aa)
           
  0.854
XP_008448133.1
U-box domain-containing protein 14 (366 aa)
           
  0.807
XP_008454543.1
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (186 aa)
           
  0.628
XP_008452884.1
Transport protein particle subunit trs120 (1196 aa)
     
   
  0.577
XP_008452238.1
Ras-related protein RABD1 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (201 aa)
           
  0.559
XP_008462589.1
Sorting nexin 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (400 aa)
           
  0.558
XP_008451520.1
Syntaxin-42 isoform X1; Belongs to the syntaxin family (320 aa)
           
  0.555
XP_008437759.1
Uncharacterized protein C594.04c (325 aa)
           
  0.553
XP_008445072.1
Putative UDP-sugar transporter DDB_G0278631; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (317 aa)
           
  0.552
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (11%) [HD]