STRINGSTRING
XP_008439467.1 protein (Cucumis melo) - STRING interaction network
"XP_008439467.1" - Vacuolar protein sorting-associated protein 54, chloroplastic in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
XP_008439467.1Vacuolar protein sorting-associated protein 54, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns (1014 aa)    
Predicted Functional Partners:
XP_008441201.1
Vacuolar protein sorting-associated protein 52 A (707 aa)
     
 
  0.994
XP_008464655.1
Vacuolar protein sorting-associated protein 53 A isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (823 aa)
     
 
  0.993
XP_008461504.1
Vacuolar protein sorting-associated protein 51 homolog isoform X1 (782 aa)
     
 
  0.969
XP_008462106.1
Syndetin; Coiled-coil domain-containing protein 132 isoform X1 (1093 aa)
     
 
  0.959
XP_008464867.1
WD repeat-containing protein DWA2-like isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns (350 aa)
       
 
  0.920
XP_008459829.1
Conserved oligomeric Golgi complex subunit 4; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 mRNAs, 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns (751 aa)
     
 
  0.897
XP_008437987.1
Exocyst complex component SEC10 (838 aa)
     
 
  0.875
XP_008452742.1
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family (570 aa)
     
 
  0.870
XP_008460560.1
Conserved oligomeric Golgi complex subunit 3 (778 aa)
     
   
  0.869
XP_008444218.1
Conserved oligomeric Golgi complex subunit 6 (720 aa)
     
   
  0.869
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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