STRINGSTRING
XP_008439468.1 protein (Cucumis melo) - STRING interaction network
"XP_008439468.1" - Uncharacterized protein LOC103484261 isoform X1 in Cucumis melo
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_008439468.1Uncharacterized protein LOC103484261 isoform X1 (2329 aa)    
Predicted Functional Partners:
XP_008441228.1
Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like isoform X1 (454 aa)
     
   
  0.848
XP_008449672.1
chromodomain-helicase-DNA-binding protein 1 isoform X1 (1760 aa)
     
 
0.789
XP_008462001.1
Probable chromatin-remodeling complex ATPase chain (87 aa)
     
 
  0.776
XP_008441794.1
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII) (1615 aa)
     
 
  0.764
XP_008462762.1
Helicase protein MOM1 (2546 aa)
     
 
0.761
XP_008450503.1
Sister-chromatid cohesion protein 3 isoform X1 (1138 aa)
     
 
  0.752
XP_008459487.1
Protein NETWORKED 4A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns (522 aa)
           
  0.748
XP_008457275.1
High mobility group B protein 15 (421 aa)
     
 
  0.735
XP_008452910.1
High mobility group B protein 9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns (324 aa)
     
 
  0.735
XP_008439562.1
FACT complex subunit SPT16; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 mRNA, 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (1073 aa)
     
 
  0.717
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
Server load: low (6%) [HD]