STRINGSTRING
XP_008439490.1 protein (Cucumis melo) - STRING interaction network
"XP_008439490.1" - Protein SUPPRESSOR OF FRI 4 isoform X2 in Cucumis melo
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
XP_008439490.1Protein SUPPRESSOR OF FRI 4 isoform X2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns (390 aa)    
Predicted Functional Partners:
XP_008449489.1
FRIGIDA-like protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns; Belongs to the Frigida family (680 aa)
       
 
  0.971
XP_008465749.1
Mitotic checkpoint protein BUB3.3 isoform X1 (261 aa)
     
 
  0.936
XP_008454389.1
Mitotic checkpoint protein BUB3.2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 mRNAs, 6 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns (341 aa)
     
 
  0.936
XP_008462976.1
FRIGIDA-like protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns; Belongs to the Frigida family (576 aa)
       
 
  0.924
XP_008451616.1
Homeobox protein LUMINIDEPENDENS (1072 aa)
       
 
  0.884
XP_008439820.1
Protein FRIGIDA-ESSENTIAL 1 isoform X1 (739 aa)
           
  0.854
XP_008456169.1
PRKR-interacting protein 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns (172 aa)
           
  0.853
XP_008441612.1
LOW QUALITY PROTEIN- histone-lysine N-methyltransferase ASHH2; The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS- inserted 2 bases in 1 codon (2082 aa)
       
 
  0.822
XP_008460355.1
Uncharacterized protein LOC103499203 isoform X1 (540 aa)
       
 
  0.820
XP_008455277.1
Mitotic checkpoint serine/threonine-protein kinase BUB1 (532 aa)
       
 
  0.820
Your Current Organism:
Cucumis melo
NCBI taxonomy Id: 3656
Other names: C. melo, Cucumis melo, Cucumis melo L., Oriental melon, muskmelon
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